Yachida_2019_CRC

Study: Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer

Publication: Yachida et al., Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer (2019, Nature Medicine)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJDB4176

Last annotation change: 2024-08-12

Human Metadata

alcohol_consumption

99%
0.0
 264
180.0
 12
813.0
 11
633.0
 10
other values
345

brinkman_index

99%
0.0
 138
0
 127
300
 11
400
 6
other values
358

collection_status

 4%
post-operation
 28

disease_group

99%
Healthy
 251
Stage_I_II
 131
Stage_III_IV
 81
Stage_0
 73
other values
 107

disease_stage

 47%
I
 86
0
 72
IIA
 35
IIIB
 29
other values
 81

tumor_location

 44%
Rectum
 107
Right colon
 91
Left colon
 76
Left colon and Right colon
 7
other values
 4

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi