Worby_2022_rUTI

Study: Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women

Publication: Worby et al., Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women (2022, Nature Microbiology)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA400628

Last annotation change: 2025-09-30

Human Metadata

UTIs

98%
0
259
4
 97
1
 59
3
 40
2
 21

active_bact_cul

75%
1
 204
0
 160

alcohol

75%
1
274
0
 91

beans

74%
1
 215
0
 144

blood

76%
0
359
1
 8

cloudy

76%
0
335
1
 32

dairy

75%
1
354
0
 11

diagnosed_utis

 19%
1
 94

diet_soft_drinks

75%
0
257
1
 107

dominant_species_out

 14%
Escherichia coli
 66
Klebsiella pneumoniae
 4

dominant_species_raw

 15%
Escherichia coli
 25
Lactobacillus crispatus
 16
Escherichia unclassified
 12
Staphylococcus saprophyticus
 6
other values
 17

ecoli_utis

 19%
1
 73
0
 21

eggs

75%
1
302
0
 61

fish

75%
1
 193
0
 171

frequency

76%
0
313
1
 53
2
 1

fruit_juice

75%
1
 208
0
 157

fruits

75%
1
337
0
 29

intercourse

63%
0
 60
4
 51
3
 48
2
 43
other values
 104

need

76%
0
320
1
 47

painful

76%
0
343
1
 24

probiotic

75%
0
297
1
 69

processed_meats

75%
1
252
0
 111

red_meat

75%
1
261
0
 104

shellfish

75%
0
 207
1
 158

smelly

76%
0
341
1
 26

soft_drinks

75%
1
276
0
 90

starch

74%
1
351
0
 10

sweets

75%
1
346
0
 19

tea

75%
1
 193
0
 172

type

100%
stool
371
urine raw
 43
rectal outgrowth
 27
rectal raw
 26
other values
 15

veg

75%
1
345
0
 21

water

75%
1
364
0
 2

white_meat

74%
1
309
0
 52

whole_grain

74%
1
289
0
 72

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi