Strazar_2021_Tanzania

Study: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations

Publication: Stražar et al., Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations (2021, Nature Communications)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA686265

Last annotation change: 2025-09-29

Human Metadata

Alcohol_Amount_Weekdays

100%
Not applicable
202
1-2 units per day
 73
3-4 units per day
 14
Unknow
 11
other values
 20

Alcohol_Amount_Weekends

100%
Not applicable
202
1-2 units per day
 61
3-4 units per day
 28
>4 units per day
 22
other values
 7

Alcohol_type

 36%
Beer
 72
Banana brew
 45

Amount_Milk

100%
Small amount per week
 149
Small amount per day
 114
Never
 34
Half litre per day
 19
A litre per day
 4

Animal_Exposure_Current

100%
No
178
Yes
 142

Antibiotics_Course

60%
1-3 courses
164
>3 courses
 28

Banana_cat

100%
<2x
194
2-4x
 106
>4x
 20

Beans/week

100%
2
 66
3
 63
1
 62
5
 33
other values
 96

Birds_exposure

100%
No
195
Yes
 125

Cattle_exposure

100%
No
262
Yes
 58

Diagnosis_Age

100%
Not applicable
243
50
 11
70
 7
60
 6
other values
 53

Drinking_Alcohol

100%
No
202
Yes
 118

Drinking_Carbonated_Soda

100%
1x per per week
 119
1-3x per week
 114
3-6x per week
 51
Everyday
 27
other values
 9

Drinking_Water

100%
unboilled tape water(raw water)
273
boilled tape water
 47

Drinking_tea_Sugar

100%
Everyday
189
3-6x per week
 74
1-3x per week
 32
1x per week
 14
Never
 11

Eat_Visceral_Organs

100%
Yes
246
No
 74

Eat_intestine

100%
Yes
246
No
 74

Family_disease

100%
Not applicable
243
Diabetes
 40
Heart attack
 11
Hypertension
 7
other values
 19

Family_history_disease

100%
No
243
Yes
 77

Family_member

 24%
Mother
 31
Father
 18
Brother
 8
Sister
 8
other values
 12

Fish/week

100%
1
 92
2
 70
3
 60
4
 43
other values
 55

Fish_cat

100%
2-4x
173
<2x
 103
>4x
 44

Frequency_Diarrhea

100%
Once in a long while
199
<1 day per month
 116
1-4 days per month
 5

Frequent_eat_meat

100%
1-3x per week
164
3-6x per week
 72
<1x per week
 67
Everyday
 17

Frequent_meat

100%
Beef
265
Chicken
 25
Pork
 20
Goat
 10

Fruits/week

100%
7
 109
3
 42
6
 39
1
 36
other values
 94

Green_Vegetables/week

100%
7
 144
3
 44
6
 35
4
 31
other values
 66

Last_Antibiotics_Course

100%
Not applicable
 128
>12 months ago
 83
6-12 months ago
 65
3-6 months ago
 44

Milk_type

100%
Sour milk
192
Fresh pasteurized
 89
Not applicable
 34
Fresh industrial
 5

Of_which_animal

100%
Yes, only cow
188
No
 74
Yes, cow and other animals
 47
Yes, only goat
 11

Pets_exposure

100%
No
277
Yes
 43

Potato_Chips/week

100%
1
162
0
 57
2
 51
3
 20
other values
 30

Residency_Area

100%
Urban
250
Rural
 70

Rice/week

100%
3
 78
2
 75
1
 42
7
 42
other values
 83

Rice_cat

100%
2-4x
177
>4x
 95
<2x
 48

Seasonality

100%
Dry
230
Rainy
 90

Smoky_fuel

100%
Non-smoky fuel
204
Smoky fuel
 116

Sour_milk

100%
Yes
192
No
 128

Source_Water

100%
Tap water
311
Well water
 7
Spring water
 1
River/ canal water
 1

Toilet_Facility

100%
Water flashing toilet
242
Pit latrine
 78

Ugali/week

100%
3
 69
7
 59
4
 50
6
 40
other values
 102

Vaccination_3years

100%
No
211
Yes
 109

Wheat/week

100%
7
 150
6
 35
4
 29
2
 28
other values
 78

beans_cat

100%
2-4x
 157
>4x
 91
<2x
 72

diet_full

100%
omni
320

fruits_cat

100%
>4x
183
2-4x
 96
<2x
 41

latitude_original

100%
-6.37
320

longitude_original

100%
34.89
320

plantain/week

100%
1
161
2
 63
0
 33
4
 23
other values
 40

potatochips_cat

100%
<2x
311
2-4x
 9

ugali_cat

100%
2-4x
 158
>4x
 128
<2x
 34

vegetable_cat

100%
>4x
207
2-4x
 100
<2x
 13

visceral_organs

100%
Yes, only cow
188
No
 74
Yes, cow and other animals
 47
Yes, only goat
 11

wheat_cat

100%
>4x
210
2-4x
 78
<2x
 32

Found an error? Search for existing discussions on GitHub – Open an issue on GitHub
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi