Smillie_2018_FMT_CDI

Study: Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation

Publication: Smillie et al., Strain Tracking Reveals the Determinants of Bacterial Engraftment in the Human Gut Following Fecal Microbiota Transplantation (2018, Cell Host & Microbe)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJEB23524

Last annotation change: 2025-10-31

Human Metadata

Abx_time(N_days_before_FMT)

81%
2
71
4
 4%
7
 2%
1
 2%
0
 2%

FMT_route

81%
Colonoscopy
 41
Nasogastric tube
 40

donor_id

81%
Smillie_2018_FMT_CDI.MGH03D
59
Smillie_2018_FMT_CDI.MGH07D
 12
Smillie_2018_FMT_CDI.MGH01D
 8
Smillie_2018_FMT_CDI.MGH06D
 2%

success

81%
TRUE
62
FALSE
 19

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi