Satinsky_2014_aquatic_river_Amazon

Study: The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010

Publication: Satinsky et al., The Amazon continuum dataset: quantitative metagenomic and metatranscriptomic inventories of the Amazon River plume, June 2010 (2014, Microbiome)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA237344

Last annotation change: 2025-09-29

Environmental Metadata

Chlorophyll_ug_perL

50%
0.70
 4
0.87
 4
1.03
 4
1.67
 4
other values
 32

bacterial_carb_prod_pmol_leu_perL_perhr

50%
1079
 4
112.48
 4
1135
 4
139.68
 4
other values
 32

bacterial_count_cell_per_mL

50%
3.64E06
 8
3.27E06
 4
3.48E06
 4
3.58E06
 4
other values
 28

beam_atten_m-1

50%
0.19
 4
0.21
 4
0.25
 4
0.30
 4
other values
 32

beam_trans_perc

50%
0.0
 8
45.80
 4
5.3
 4
84.92
 4
other values
 28

collection_time

50%
10:29
 4
10:43
 4
10:55
 4
11:00
 4
other values
 32

conduc_uS_per_cm

50%
15.9
 4
16.8
 4
18.2
 4
20.3
 4
other values
 32

corr_irradiance_pct

50%
1
 4
1.30
 4
15
 4
2
 4
other values
 32

density

50%
0.9961 g/ml
 4
1.0058 g/ml
 4
1.0130 g/ml
 4
1.0201 g/ml
 4
other values
 32

diss_inorg_carb

91%
1373 _mol/kg
 4
155 umol C/kg
 4
156 umol C/kg
 4
1576 _mol/kg
 4
other values
72

diss_oxy_mumolperkg

 41%
112.6
 4
147.8
 4
188.26
 4
188.39
 4
other values
 24

fluorescence_mgm_3

50%
0.01
 4
0.10
 4
0.16
 4
0.24
 4
other values
 32

max_filter_size

100%
156 Aum
 24
2.0 Aum
 24
156 _m
 12
2.0 _m
 12
other values
 24

min_filter_size

100%
0.2 Aum
 24
2.0 Aum
 24
0.2 _m
 12
0.2 um
 12
other values
 24

oxy_sat_pct

 41%
108.60
 4
111.8
 4
115.7
 4
120.81
 4
other values
 24

par

50%
0.0218 AuEm-2sec-1
 4
0.0260 AuEm-2sec-1
 4
0.0804 AuEm-2sec-1
 4
0.1221 AuEm-2sec-1
 4
other values
 32

pressure_Db

50%
1.2
 24
3.66
 4
3.78
 4
3.92
 4
other values
 12

salinity_PSU

50%
0.05
 4
13.10
 4
22.55
 4
22.92
 4
other values
 32

samp_volume_L

100%
10
 4
10.8
 4
6.0
 4
1.35
 3
other values
81

sample_description

75%
Keywords: GSC:MIxS;MIMS:5.0
48
Metagenome
 24

sample_title

100%
Metagenome or environmental sample from aquatic metagenome
48
MIMS Environmental/Metagenome sample from aquatic metagenome
48

sampling_cruise

50%
R/V Knorr, May-June 2010
 24
R/V Atlantis, July 2012
 24

sigma.theta

50%
-3.91
 4
12.63
 4
13.03
 4
15.62
 4
other values
 32

site_name

100%
Belem (BLM)
 8
Macapa North (MCPN)
 8
Macapa South (MCPS)
 8
Obidos (OB)
 8
other values
64

std_norm_factor

97%
1005512.4
 1%
103681.5
 1%
104120.1
 1%
104368
 1%
other values
90

turbidity

50%
-999
 24
1.07 NTU
 4
1.10 NTU
 4
1.12 NTU
 4
other values
 12
Found an error? Search for existing discussions on GitHub – Open an issue on GitHub
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi