Rovira_2019_farm

Study: Characterization of the Microbial Resistome in Conventional and 'Raised Without Antibiotics' Beef and Dairy Production Systems

Publication: Rovira et al., Characterization of the Microbial Resistome in Conventional and "Raised Without Antibiotics" Beef and Dairy Production Systems (2019, Frontiers In Microbiology)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA379303

Last annotation change: 2025-09-29

Animal Metadata

Farm

100%
Feedlot
32
Dairy
32

feeding_practice

100%
Natural
32
Conventional
32

samp_collect_device

100%
Pen floor
64

Found an error? Search for existing discussions on GitHub – Open an issue on GitHub

Environmental Metadata

Farm

100%
Feedlot
32
Dairy
32

Practices

100%
Natural
32
Conventional
32

Type_of_sample

100%
Waste.Water
32
Soil
32

feeeding_practice

100%
Organic dairy farm
 16
Natural Feedlot
 16
Conventional dairy farm
 16
Conventional Feedlot
 16

host

100%
wastewater_type
32
soil_type
32

samp_collect_device

100%
Soil auger
32
Plastic bottle
32

Found an error? Search for existing discussions on GitHub – Open an issue on GitHub
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi