Louca_2020_microcosm

Study: Mud microcosms

Publication: Louca et al., Effects of forced taxonomic transitions on metabolic composition and function in microbial microcosms (2020, Environmental Microbiology Reports)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA564649

Last annotation change: 2025-09-29

Environmental Metadata

O2_gradient_uM_per_mm

95%
19.569425
 4
14.00245
 2
14.235975
 2
14.91486667
 2
other values
30

PMA_treated

100%
yes
39
no
 3

location_in_microcosm

95%
bottom
31
top
 9

microcosm_ID

95%
D.12.A
 4
D.12.B
 2
D.12.C
 2
D.12.D
 2
other values
30

rel_to_oxygen

100%
anaerobe
42

replicate_number

95%
A
 12
C
 10
B
 10
D
 5
E
 3

salinity (PSU)

100%
0
33
19
 9

samp_collect_device

100%
core
42

samp_mat_process

92%
PMA
39

samp_size

100%
0.2 g
42

temperature_shock

95%
no
32
yes
 8

time_point

100%
12
25
9
 15
0
 2

treatment_group

100%
D
 17
S
 9
T
 8
A
 6
Trout_Lake
 2

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi