Levade_2020_cholera

Study: Predicting Vibrio cholerae infection and disease severity using metagenomics in a prospective cohort study

Publication: Levade et al., Predicting Vibrio cholerae Infection and Disease Severity Using Metagenomics in a Prospective Cohort Study (2021, The Journal Of Infectious Diseases)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA608678

Last annotation change: 2025-09-29

Human Metadata

Baseline_vibriocidal_titer_on_day_2_Inaba

100%
5
 46
20
 16
10
 13
80
 13
other values
 10

Baseline_vibriocidal_titer_on_day_2_Ogawa

100%
5
 36
20
 17
40
 15
80
 10
other values
 20

Blood_group_O

100%
no
77
yes
 21

Datasets

100%
Midani 2018, Expanded
73
Expanded
 25

Day_sampled

100%
2
79
7
 12
10
 5
6
 1%
3
 1%

Malnutrition

100%
no
71
yes
 27

Symptom_outcome

100%
UnInfected
 45
Asymptomatic infected
 39
Symptomatic infected
 14

sample_description

100%
1.01d2 Gut microbiome with PhiX and human reads removed
 1%
10.01d2 Gut microbiome with PhiX and human reads removed
 1%
11.01d10 Gut microbiome with PhiX and human reads removed
 1%
11.01d2 Gut microbiome with PhiX and human reads removed
 1%
other values
94

Blood_group

100%
A+
 36
B+
 34
O+
 19
AB+
 5
other values
 4

sample_title

100%
1.01d2
 1%
10.01d2
 1%
11.01d10
 1%
11.01d2
 1%
other values
94
Found an error? Search for existing discussions on GitHub – Open an issue on GitHub
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi