Hendriksen_2019_sewage_global

Study: Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage

Publication: Hendriksen et al., Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage (2019, Nature Communications)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJEB13831

Last annotation change: 2025-09-30

Environmental Metadata

city

100%
El Paso
 4
Copenhagen
 3
Belem
 2
Abidjan
 1
other values
71

country_ID

100%
USA
 10
CAN
 4
DNK
 3
AUS
 2
other values
62

demography

93%
1000000
 4
500000
 4
2000000
 3
600000
 2
other values
63

demography_class

81%
All
44
Middle class
 7
Middle and lower class
 5
Upper and middle class
 4
other values
 6

resi_Ciprofloxacin

75%
1500
 3
1100
 2
1400
 2
2200
 2
other values
52

resi_Dapson

75%
0
51
16
 1
20
 1
28
 1
other values
 7

resi_Dihydrostreptomycine

75%
0
60
7
 1

resi_Doxycyline

75%
0
 6
230
 4
120
 3
220
 3
other values
45

resi_Enrofloxacin

75%
0
54
13
 1
25
 1
37
 1
other values
 4

resi_Erythromycin

75%
0
50
2050
 1
220
 1
270
 1
other values
 8

resi_Josamycin

75%
0
60
3400
 1

resi_Lincomycin

75%
0
 39
19
 2
110
 1
1200
 1
other values
 18

resi_Nalidixinezuur

75%
0
51
150
 1
1600
 1
20
 1
other values
 7

resi_Norfloxacin

75%
0
 18
160
 3
110
 1
1100
 1
other values
 38

resi_Oxolinezuur

75%
0
50
16
 3
13
 2
11
 1
other values
 5

resi_Oxytetracycline

75%
0
46
10000
 1
12000
 1
1800
 1
other values
 12

resi_Sarafloxacin

75%
0
56
12
 1
22
 1
26
 1
other values
 2

resi_Spiramycin

75%
0
53
110
 1
1350
 1
150
 1
other values
 5

resi_Sulfacetamide

75%
0
57
49
 1
46
 1
450
 1
17
 1

resi_Sulfadiazine

75%
0
52
170
 2
10
 1
12
 1
other values
 5

resi_Sulfadimethoxine

75%
0
57
7
 1
56
 1
19
 1
12
 1

resi_Sulfadimidine

75%
0
50
160
 2
54
 2
16
 1
other values
 6

resi_Sulfadoxine

75%
0
50
1700
 2
1250
 1
1300
 1
other values
 7

resi_Sulfamerazine

75%
0
60
120
 1

resi_Sulfamethizole

75%
0
55
1000
 1
1200
 1
35
 1
other values
 3

resi_Sulfamethoxazole

75%
1100
 3
130
 3
55
 3
590
 3
other values
49

resi_Sulfapyridine

75%
0
 15
170
 3
100
 2
120
 2
other values
 39

resi_Sulfathiazole

75%
0
51
1200
 1
140
 1
230
 1
other values
 7

resi_Sulfisoxazole

75%
0
60
114
 1

resi_Tetracycline

75%
0
 9
150
 4
100
 2
120
 2
other values
44

resi_Tobramycine

75%
0
60
12
 1

resi_Trimethoprim

75%
0
 7
150
 3
200
 3
270
 2
other values
46

resi_Trovafloxacin_

75%
0
59
9
 1
25
 1

resi_Tylosine

75%
0
60
150
 1

resi_X.Lev.ofloxacin

75%
0
 6
100
 2
140
 2
200
 2
other values
49

season

79%
Winter
42
Summer
 13
Spring
 9

season_type

71%
Wet season
 32
Dry season
 26

sewage_type

100%
wastewater treatment plant
60
open sewer line
 11
river
 2
waste water pipe (before wastewater treatment plant)
 2
other values
 6

shipping_date

70%
02-11-2016
 6
02-01-2016
 5
02-08-2016
 5
02-05-2016
 4
other values
 37

site_farming

82%
No
45
Yes
 22

site_hospital

82%
Yes
57
No
 10

site_industry

82%
Yes
41
No
 26

site_size_km_sq

60%
100
 2
25
 2
70
 2
1
 1
other values
42

site_slaughterhouse

80%
No
41
Yes
 24

storage_temp

96%
-80
47
-70
 7
4
 4
6
 4
other values
 16

temp_today

90%
11
 6
16,1
 4
4
 4
27
 3
other values
56

temp_yesterday

86%
10
 4
13
 4
-2
 3
2
 3
other values
56

transport_temp

93%
4
 37
10
 6
6
 5
-20
 4
other values
 24

transport_time

88%
30
 19
60
 11
20
 8
15
 5
other values
 29

velocity_rank

84%
5
 30
3
 16
4
 14
2
 5
1
 3

weather

93%
Sunny
 29
Cloudy
 14
Partly cloudy
 14
Rainy - showers
 10
other values
 9

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi