Hendriksen_2019_sewage_Kenya

Study: Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach

Publication: Hendriksen et al., Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach (2019, PloS One)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJEB13833

Last annotation change: 2024-12-13

Environmental Metadata

acute_fibrile_illness_clinic_visits

91%
1
 18
2
 13
3
 5
0
 4
4
 2

all_cause_clinic_visitx

91%
32
 6
16
 4
22
 4
24
 4
other values
24

diarrhea_clinic_visits

91%
1
 16
0
 12
2
 11
3
 3

diarrhea_reported_on_household_level

91%
4
 10
0
 8
2
 8
3
 7
other values
 9

epi_week

100%
25
 5
26
 5
28
 5
27
 4
other values
27

site

100%
10
25
9
 21

subjective_fever_reported_on_household_level

91%
3
 11
1
 8
5
 7
4
 6
other values
 10

week_start_date

91%
2014-06-18
 5
2014-06-25
 5
2014-07-09
 5
2014-07-02
 4
other values
23

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi