Grzeskowiak_2017_cdiff_pig

Study: Formula Feeding Predisposes Neonatal Piglets to Clostridium difficile Gut Infection

Publication: Grzeskowiak et al., Formula Feeding Predisposes Neonatal Piglets to Clostridium difficile Gut Infection (2018, The Journal Of Infectious Diseases)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJEB19642

Last annotation change: 2025-09-29

Animal Metadata

Behaviour

 27%
normal
 6

Body_condition

 27%
normal
 6

Fecal_score_1_constipation_2_normal_3_moderate_4_diarrheic_cohort_avg

 27%
2
 3
1.83 +- 0.41
 3

Feed_intake

 27%
normal
 6

agerange

100%
piglet
14
sow
 8

cohort

100%
WP
 8
S
 8
FP-CD
 3
FP
 3

depth_m

100%
0
22

diet_description

 27%
bovine milk based formula approximately 46 percent lactose and 20 percent ether extract and 23 percent crude protein
 6

diet_period

 27%
4 days
 6

elevation_m

100%
56
22

included_in_trail_design

100%
no
16
yes
 6

infected_with

 13%
10^8 CFU C. difficile 078
 3

latitude_original

100%
52.4586
22

longitude_original

100%
13.2887
22

timepoint_of_euthanasia

 27%
euthanasia at day 4 of diet
 6

timepoint_of_infection

 13%
infection at day 1 of diet
 3

trial_design_III

100%
not included in trial design in figure I
16
infected
 3
control
 3

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi