Study: Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome

Publication: Gasparrini et al., Persistent metagenomic signatures of early-life hospitalization and antibiotic treatment in the infant gut microbiota and resistome (2019, Nature Microbiology)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA489090

Last annotation change: 2025-10-31

Human Metadata

4
 67
3
 57
87
 21
103
 19
830
 21
920
 17
1000
 16
800
 14
0
348
1
 81
No
414
Yes
 15

DOL

100%
2
 9
38
 7
295
 6
48
 6

GBS

100%
Negative
217
Unknown
 152
Positive
 60
26
 51
36
 50
29
 40
24
 38
0
368
1
 61
0
 162
10
 17
15
 17
4
 17
0
366
1
 63
0
355
1
 74

c_AllAbx

100%
0
 162
3
 22
10
 19
4
 17
other values
 209
0
423
3
 4
2
 2
0
 179
6
 64
2
 60
7
 41
0
424
4
 5
0
418
3
 6
1
 5

c_Cefepime

100%
0
393
2
 6
1
 5
18
 5
0
373
1
 23
2
 11
6
 9
0
416
2
 5
1
 5
4
 3
0
367
2
 21
1
 12
19
 12
0
363
6
 10
12
 8
16
 8
0
 162
2
 56
4
 39
7
 35
other values
 137
0
372
6
 17
22
 8
5
 8
0
426
13
 3
0
412
5
 7
4
 6
1
 4
0
420
9
 9
0
419
6
 5
1
 5
0
240
1
 23
7
 23
2
 21
other values
 122

m_AllAbx

100%
0
320
2
 51
3
 22
4
 22
0
425
1
 4
0
383
1
 46
0
428
1
 1
0
427
1
 2

m_Cefepime

100%
0
417
1
 12
0
414
1
 15
0
424
1
 5
0
408
1
 21
0
412
1
 17
0
347
1
 82
0
411
1
 18
0
429
0
426
1
 3
0
425
1
 4
0
352
1
 77

w_AllAbx

100%
0
401
2
 10
3
 9
1
 8
4
 1
0
426
1
 3
0
424
1
 5
0
427
1
 2

w_Cefepime

100%
0
428
1
 1
0
424
1
 5
0
428
1
 1
0
427
1
 2
0
426
1
 3
0
418
1
 11
0
425
1
 4
0
429
0
427
1
 2
0
428
1
 1
0
410
1
 19
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi