Gaio_2020_pig

Study: Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig

Publication: Gaio et al., Phylogenetic diversity analysis of shotgun metagenomic reads describes gut microbiome development and treatment effects in the post-weaned pig (2022, PloS One)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA526405

Last annotation change: 2025-08-11

Animal Metadata

cohort_name

96%
Neomycin
 150
Control
 142
Neomycin+D-scour
 139
D-scour
 133
other values
 303

dysentery

96%
0
855
1
 12

host_life_stage

96%
Weaner
825
Sow
 42

pig_pen

91%
2C
 50
4C
 50
3A
 46
4A
 46
other values
633

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi