Dai_2019_respiratory_tract

Study: An integrated respiratory microbial gene catalogue to better underst, the microbial aetiology of Mycoplasma pneumoniae pneumonia

Publication: Dai et al., An integrated respiratory microbial gene catalogue to better understand the microbial aetiology of Mycoplasma pneumoniae pneumonia (2019, GigaScience)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA413615

Last annotation change: 2025-09-29

Human Metadata

CRP_mg_l

 48%
<0.499
 48
14.2
 5
13.6
 4
101.7
 3
other values
 103

Cough

 46%
Y
 156

DurationFever

 48%
0
 68
10
 10
15
 9
14
 7
other values
 69

DurationHospitalization

 48%
7
 23
8
 21
5
 19
9
 19
other values
 81

Eosinophils

 48%
0
 12
0.1
 10
2.9
 10
0.5
 9
other values
 122

Family_history_of_allergy

 0%
Y
 2

History_of_pneumonia

 8%
Y
 29

Lung_consolidation_atelectasis_infiltration

 48%
Y
 163

PCT_ng_ml

 48%
0.03
 40
0.02
 33
0.04
 11
0.05
 11
other values
 68

Pathogen_detection_using_BALF

 48%
Mycoplasma pneumoniae
 86
Unknown
 24
Mycoplasma pneumoniae,Streptococcus pneumoniae
 11
Streptococcus pneumoniae
 8
other values
 34

Wheezing

 12%
Y
 40

feeding

100%
Breast feed
187
Breast,Milk feed
 66
Milk feed
 53
Breast feed, Milk feed
 28

type_of_birth_full

100%
Vaginally born
199
Cesarean section
 135

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi