Chng_2016_skin

Study: Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare

Publication: Chng et al., Whole metagenome profiling reveals skin microbiome-dependent susceptibility to atopic dermatitis flare (2016, Nature Microbiology)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA277905

Last annotation change: 2025-10-31

Human Metadata

alcohol

100%
Occasionally
55
Non-drinker
 36

allerg_dust_mite_D_pteronyssinus

86%
3+
 39
0
 30
2+
 6
4+
 2
1+
 2

allergy_Curvularia

86%
0
73
1+
 4
3+
 2

allergy_dust_mite_Blomia_tropicalis

86%
3+
 37
0
 30
2+
 8
1+
 4

allergy_oil_palm_pollen

86%
0
65
1+
 10
3+
 4

asthma_status

63%
CTR
 38
intermediate_asthma
 10
asthma
 10

atopic_rhinitis_status

70%
atopic_rhinitis
 30
CTR
 30
intermediate_atopic_rhinitis
 2
Intermediate
 2

country_of_birth

100%
Singapore
49
China
 18
Malaysia
 8
Poland
 8
other values
 8

latitude_original

100%
1.3521
91

longitude_original

100%
103.8198
91

pets

100%
No
50
Yes
 39
0
 2

sample_collection

100%
tape
84
swab
 5
Kligman
 2

sample_description

100%
not applicable
91

skin_site_HMP

100%
antecubital fossa
79
retroauricular crease
 6
antecubital fossa _ right
 3
antecubital fossa _ left
 3

skin_site_short

100%
Ac
79
Ra
 6
Ac-R
 3
Ac-L
 3

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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi