Biller_2018_GEOTRACES_marine_pelagic

Study: Marine microbial metagenomes sampled across space and time

Publication: Biller et al., Marine microbial metagenomes sampled across space and time (2018, Scientific Data)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA385854

Last annotation change: 2025-09-29

Ocean Metadata

Atom_ratio_of_dissolved_C_isotopes_in_dissolved_inorganic_carbon_expressed_in_conventional_delta_notation_referenced_to_PDB_[per_10^3]

 19%
0.56
 4
0.91
 4
0.32
 3
0.33
 3
other values
 78

Atom_ratio_of_dissolved_Fe_isotopes_expressed_in_conventional_DELTA_notation_referenced_to_IRMM-14_[per_10^3]

 0%
0.52
 2
0.08
 1

Atom_ratio_of_dissolved_N_isotopes_in_nitrate_expressed_in_conventional_DELTA_notation__referenced_to_Air_N2,_samples_may_or_may_not_have_been_filtered__[per_10^3]

 18%
13.93
 2
2.53
 2
2.65
 2
4.345
 2
other values
 82

Atom_ratio_of_dissolved_Nd_isotopes_expressed_in_conventional_EPSILON_notation__[per_10^4]

 0%
-12.36
 1
-11.36
 1

Atom_ratio_of_dissolved_Zn_isotopes_expressed_in_conventional_DELTA_notation_referenced_to_Lyon-JMC__[per_10^3]

 0%
0.61
 1
0.52
 1
-0.12
 1

Atom_ratio_of_dissolved_silicate_(silicic_acid)_Si_isotopes_expressed_in_conventional_DELTA_notation_referenced_to_{NBS28[per_10^3]

 1%
2.36
 1
2.28
 1
2.22
 1
2.17
 1
1.85
 1

Atom_ratio_of_given_isotopes_for_dissolved_Pb_referenced_to_NBS981

 0%
2.4578
 1
2.4549
 1
2.4514
 1

Atom_ratio_of_hydrogen_isotopes_in_water_expressed_in_conventional_DELTA_notation_referenced_to_VSMOW__[per_10^3]

 3%
2.75
 1
3.27
 1
3.54
 1
3.84
 1
other values
 13

Atom_ratio_of_oxygen_isotopes_in_water_expressed_in_conventional_DELTA_notation_referenced_to_VSMOW_[per_10^3]

 3%
0.94
 2
1.02
 2
1.2
 2
0.44
 1
other values
 10

Bot._Depth_[m]

100%
4607
 14
5041
 12
5852
 10
5103
 9
other values
435

Concentration_(or_activity)_of_dissolved_226Ra_[mBq/kg]

 1%
1.398374
 2
1.479675
 1
1.430894
 1
1.203252
 1

Concentration_(or_activity)_of_dissolved_230Th_[uBq/kg]

 0%
3.160352
 1
0.645745
 1

Concentration_(or_activity)_of_dissolved_230Th__[uBq/kg]

 16%
0.91164
 3
0.919237
 3
0.615357
 2
0.896446
 2
other values
 71

Concentration_(or_activity)_of_dissolved_231Pa__[uBq/kg]

 0%
2.831112
 1
0.69904
 1

Concentration_(or_activity)_of_dissolved_232Th__[pmol/kg]

 0%
0.384452
 1

Concentration_of_dissolved_Ce_[pmol/kg]

 0%
34.242367
 1
24.046753
 1
21.309803
 1

Concentration_of_dissolved_Dy_[pmol/kg]

 0%
6.643774
 1
6.497401
 1
5.534944
 1

Concentration_of_dissolved_Er__[pmol/kg]

 0%
5.328614
 1
4.630606
 1
4.339798
 1

Concentration_of_dissolved_Eu_[pmol/kg]

 0%
1.470774
 1
1.11447
 1
1.062381
 1

Concentration_of_dissolved_Gd_[pmol/kg]

 0%
6.941964
 1
5.725804
 1
5.332615
 1

Concentration_of_dissolved_Helium__[nmol/kg]

 22%
1.6648
 2
1.6883
 2
1.7131
 2
1.7132
 2
other values
 101

Concentration_of_dissolved_Ho_[pmol/kg]

 0%
1.66434
 1
1.514359
 1
1.371094
 1

Concentration_of_dissolved_L1_Cu-binding_ligand_[nmol/kg]

 0%
3.02439
 1

Concentration_of_dissolved_L1_Fe-binding_ligand_[nmol/kg]

 0%
1.180488
 1
0.887805
 1
0
 1

Concentration_of_dissolved_L2_Fe-binding_ligand_[nmol/kg]

 0%
1.580488
 1
1.170732
 1
0.692683
 1

Concentration_of_dissolved_La_[pmol/kg]

 0%
28.275574
 1
22.249216
 1
21.335705
 1

Concentration_of_dissolved_Lu__[pmol/kg]

 0%
0.706134
 1
0.558226
 1
0.555539
 1

Concentration_of_dissolved_Nd_[pmol/kg]

 0%
30.486507
 1
21.193954
 1
21.073982
 1

Concentration_of_dissolved_Neon_[nmol/kg]

 22%
7.059
 3
6.54
 2
6.702
 2
6.885
 2
other values
 100

Concentration_of_dissolved_Nitrite_[umol/kg]

60%
0
 75
0.01
 24
0.02
 19
0.03
 14
other values
 159

Concentration_of_dissolved_Phosphate_[umol/kg]

91%
0
 32
0.01
 15
0.02
 15
0.03
 8
other values
368

Concentration_of_dissolved_Pr_[pmol/kg]

 0%
6.947315
 1
4.755691
 1
4.687501
 1

Concentration_of_dissolved_Sm_[pmol/kg]

 0%
6.017167
 1
4.158848
 1
4.126679
 1

Concentration_of_dissolved_Tb_[pmol/kg]

 0%
1.018977
 1
0.893049
 1
0.799602
 1

Concentration_of_dissolved_Tm_[pmol/kg]

 0%
0.7204
 1
0.604914
 1
0.590052
 1

Concentration_of_dissolved_Yb_[pmol/kg]

 0%
4.447137
 1
3.634207
 1
3.520768
 1

Concentration_of_dissolved_Yttrium__[pmol/kg]

 0%
152.612625
 1
132.678207
 1
132.430313
 1

Concentration_of_dissolved__gallium_[pmol/kg]

 0%
31.6
 1
31.35
 1
30.200001
 1

Concentration_of_dissolved__lead_[pmol/kg]

 0%
22.5
 1
17
 1
14
 1

Concentration_of_dissolved__manganese_[nmol/kg]

 0%
2.376
 1

Concentration_of_dissolved__nickel_[nmol/kg]

 0%
2.148
 1

Concentration_of_dissolved__zinc_[nmol/kg]

 0%
15
 1
0.02
 1
0.01
 1

Concentration_of_dissolved_aluminium_[nmol/kg]

 0%
16.351219
 1
13.560976
 1

Concentration_of_dissolved_barium_[nmol/kg]

 0%
38.5
 1
37.799999
 1
35.400002
 1

Concentration_of_dissolved_cadmium_[nmol/kg]

 0%
0.00153
 1
0.00116
 1
0.00092
 1

Concentration_of_dissolved_cobalt_[pmol/kg]

 0%
36.097561
 1
29.268293
 1
25.365854
 1

Concentration_of_dissolved_copper_[nmol/kg]

 0%
0.565854
 1

Concentration_of_dissolved_ferrous_iron_[nmol/kg]

 0%
0.058537
 2
0.068293
 1

Concentration_of_dissolved_iron_[nmol/kg]

 0%
0.458537
 1
0.423768
 1
0.384634
 1

Concentration_of_dissolved_mercury_[pmol/kg]

 0%
0.357073
 1
0.2
 1
0.084195
 1

Concentration_of_dissolved_nitrate_[umol/kg]

81%
0.019512
 102
0
 65
0.1
 7
0.01
 6
other values
 210

Concentration_of_dissolved_nitrate_plus_nitrite_[umol/kg]

 11%
0.600195
 1
0.601854
 1
0.69278
 1
0.822146
 1
other values
 49

Concentration_of_dissolved_silicate_(silicic_acid_[umol/kg]

91%
0
 14
0.39
 10
0.7
 10
0.1
 8
other values
396

Concentration_of_low-level_dissolved_nitrate_determined_by_long_path_length_spectrophotometry_using_filtered_seawter__[umol/kg]

 0%
0.041561
 1
0.034634
 1
0.02039
 1

Concentration_of_low-level_dissolved_nitrite_determined_by_long_path_length_spectrophotometry_using_filtered_seawater_[umol/kg]

 0%
4
 1
0.002439
 1
0.000976
 1

Concentration_of_low-level_dissolved_phosphate_determined_by_long_path_length_spectrophotometry_using_filtered_seawater_[µmol/kg]

 0%
0.068585
 1
0.021951
 1
0.014049
 1

Concentration_of_operationally_defined_soluble_Fe[nmol/kg]

 0%
63
 1
298
 1
0.171459
 1

Concentration_of_total_alkalinity__[umol/kg]

 36%
2383.300049
 2
2390
 2
2391.699951
 2
2392.100098
 2
other values
 166

Concentration_of_tritium_expressed_as_H3/H1_ratio_in_TU,_with_1_TU_equal_to_a_H3/H1_atom_ratio_of_10^(-18)_[TU]

 22%
0.56
 3
492
 3
525
 3
545
 3
other values
 97

Cruise

100%
GP13
 185
GA02
 127
GA03
 114
GA10
 54

Cruise_Aliases:METAVAR:INDEXED_TEXT

 15%
64PE319
 41
64PE321
 35

Delta_3He_of_dissolved_He_referenced_to_air_[%]

 22%
-0.45
 3
-1.26
 3
-1.35
 3
-0.38
 2
other values
 98

Dissolved_1,1,2-Trichloro-1,2,2-trifluoroethane[pmol/kg]

 15%
29
 4
154
 3
142
 2
143
 2
other values
 62

Dissolved_Dichlorodifluoromethane[pmol/kg]

 42%
1.367
 3
1.386
 3
1.125
 2
1.128
 2
other values
 192

Dissolved_Sulfur_hexafluoride_[fmol/kg]

 23%
1.218
 3
1.222
 3
1.232
 3
1.068
 2
other values
 100

Dissolved_Trichlorofluoromethane_[pmol/kg]

 42%
1.715
 3
2.143
 3
1.852
 2
1.856
 2
other values
 193

Log_of_the_conditional_stability_constant_for_binding_of_Cu_by__L1_Cu-binding_ligand

 0%
13.2
 1

Log_of_the_conditional_stability_constant_for_binding_of_Fe_by_L1_Fe-binding_ligand

 0%
12.51
 1
12.23
 1
0
 1

Log_of_the_conditional_stability_constant_for_binding_of_Fe_by_L2_Fe-binding_ligand

 0%
11.82
 1
11.32
 1
11.18
 1

Lut_HPLC_TP_CONC_BOTTLE_[ng/liter]

 9%
0
 46

Operator's_Cruise_Name:METAVAR:INDEXED_TEXT

100%
TAN1109
 115
KN204
 94
SS2011
 70
D357
 54
other values
 147

Practical_salinity_from_CTD_sensor_on_the_PSS-1978_scale

99%
35.571999
 4
35.598
 4
35.629002
 3
35.652
 3
other values
463

SALINITY_D_CONC_BOTTLE

 37%
34.8386
 2
36.73
 2
36.939999
 2
34.331306
 1
other values
 171

Ship_Name:METAVAR:INDEXED_TEXT

100%
Tangaroa
 115
Knorr
 114
Pelagia
 76
RV Southern Surveyor
 70
other values
 105

Temperature_from_CTD_sensor_in_the_ITS-90_convention

99%
19.660999
 2
21.381001
 2
21.924999
 2
21.93
 2
other values
469

Total_dissolved_nitrogen_from_BOTTLE_sample_[umol/kg]

 3%
6.439024
 4
5.756098
 3
5.073171
 2
5.658537
 2
other values
 7

Type

100%
B
480

concentration_of_19'_Butanoyloxyfucoxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 1
10.178219
 1
10.347881
 1
11.465565
 1
other values
 42

concentration_of_19'_hexanoyloxyfucoxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 2
102.14801
 1
105.012032
 1
105.323563
 1
other values
 41

concentration_of_Alloxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 25
1.66919
 1
1.943282
 1
19.049917
 1
other values
 18

concentration_of_Chlorophyll_a_measured_using_HPLC_method_[ng/liter]

 9%
0
 4
106.68354
 1
120.072334
 1
125.735985
 1
other values
 39

concentration_of_Chlorophyll_b_measured_using_HPLC_method_[ng/liter]

 9%
0
 37
35.851776
 1
38.069996
 1
41.616058
 1
other values
 6

concentration_of_Chlorophyll_c3_measured_using_HPLC_method_[ng/liter]

 9%
0
 36
16.651819
 1
19.224201
 1
20.553082
 1
other values
 7

concentration_of_Diadinoxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 7
1.809
 1
1.973
 1
11.125
 1
other values
 36

concentration_of_Fucoxanthin_measured_using_HPLC_method_[ng/liter]

 9%
10.343193
 1
10.5624
 1
108.039955
 1
11.79836
 1
other values
 42

concentration_of_Peridinin_measured_using_HPLC_method__[ng/liter]

 9%
0
 12
10.349208
 1
11.520592
 1
11.735306
 1
other values
 31

concentration_of_Violaxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 4
1.736366
 1
10.494687
 1
10.608469
 1
other values
 39

concentration_of_Zeaxanthin_measured_using_HPLC_method_[ng/liter]

 9%
0
 17
10.539524
 1
10.810811
 1
10.937818
 1
other values
 26

concentration_of_beta-Carotene_measured_using_HPLC_method__[ng/liter]

 9%
0
 6
10.32428
 1
10.650442
 1
10.69059
 1
other values
 37

concentration_of_divinyl_chlorophyll_a_measured_using_HPLC_method_[ng/liter]

 9%
0
 36
11.18438
 1
11.645431
 1
12.329165
 1
other values
 7

dissolved_inorganic_carbon_umol_kg

 36%
2052.399902
 2
2078.300049
 2
2085.899902
 2
2091.899902
 2
other values
 167

dissolved_organic_carbon_umol_kg

 16%
53.658539
 2
69.658539
 2
110.243904
 1
113.170731
 1
other values
 71

dissolved_oxygen_SENSOR_[umol/kg]

99%
205.300003
 3
205.800003
 3
205.899994
 3
144.800003
 2
other values
464

dissolved_oxygen_umol_kg

 39%
166.100006
 2
189.199997
 2
190.100006
 2
197
 2
other values
 182

pressure_from_Conductivity_Temperature_Depth_sensor_dbar

100%
15.113
 12
102.788
 8
30.227
 8
76.582
 8
other values
444

sample_description

100%
Keywords: GSC:MIxS;MIMS:5.0
480

sample_title

100%
MIMS Environmental/Metagenome sample from marine metagenome
480
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Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi