BarYoseph_2020_FMT

Study: Oral Capsulized Fecal Microbiota Transplantation for Eradication of Carbapenemase-producing Enterobacteriaceae Colonization With a Metagenomic Perspective

Publication: Bar-Yoseph et al., Oral Capsulized Fecal Microbiota Transplantation for Eradication of Carbapenemase-producing Enterobacteriaceae Colonization With a Metagenomic Perspective (2021, Clinical Infectious Diseases : An Official Publication Of The Infectious Diseases Society Of America)

External link: SPIRE database (MAGs, genes and proteins including annotations)

Study accession: PRJNA628604

Last annotation change: 2025-09-29

Human Metadata

Carbapenemase_bla_Gene

81%
KPC
17
OXA-48
 8
NDM
 2

Infection_Control_Means

81%
Outpatient
 11
Isolated
 8
Cohorted
 8

Revised_Charlson_Comorbidity_Index

81%
4
 8
3
 6
0
 4
7
 3
other values
 6

Urinary_Catheter

81%
N
23
Y
 4

donor_recipient

100%
recipient
27
donor
 6

immunosuppression

81%
N
21
Y
 6

infecting_bacteria

81%
K. pneumoniae
 12
Enterobacter cloacae and Citrobacter freundii
 2
Enterobacter hormechai
 2
Escherichia coli
 2
other values
 9

sample_type

81%
after FMT
 14
before FMT
 13

subject_type

100%
Responders
17
Non-responders
 10
Donor
 6

Found an error? Search for existing discussions on GitHub – Open an issue on GitHub
Sample alias Spire sample name Longitude Latitude Geographic location Location resolution Collection date Collection date end Last change Tax id Environment material Environment biome Environmental package Environment feature Artificial Pmid Doi