Ocean samples

Studies:

Habitats

ocean

 2285

sea

 849

inlet

 46

bay

 43

location

100%
Atlantic Ocean (exact_location)
 682
Indian Ocean (exact_location)
 503
North Pacific Gyre (exact_location)
 503
Pacific Ocean (exact_location)
 469
other values
3897

resolution of location info

100%
exact_location
5730
region
 324

collection date

100%
2003–2010
 810
2011–2012
 1293
2013–2015
 1636
2016
 931
2017–2021
 1276
spans several years
 108

source material

100%
sea water [ENVO:00002149]
4642
marine water body [ENVO:00001999]
 971
surface water [ENVO:00002042]
 135
coastal sea water [ENVO:00002150]
 107
other values
 199

source material environment

100%
ocean [ENVO:00000015]
 2285
sea [ENVO:00000016]
 849
surface water [ENVO:00002042]
 660
marine photic zone [ENVO:00000209]
 595
other values
 1665

artificial or special treatment

 7%
cultivation
 250
sorted cells
 191
mesocosm
 2

depth (meters)

100%
5
 859
7
 710
3
 329
5.0
 327
other values
3829

salinity (PSU)

 41%
2.44-32.84
 502
32.84-34.58
 502
34.58-35.00
 615
35.00-35.97
 386
35.97-40.64
 504

temperature (°C)

64%
-1.7-7.2
 777
7.2-18.0
 771
18.0-23.8
 783
23.9-27.1
 778
27.1-32.6
 776

protocol label

 31%
external_TruSeq Nano DNA library
 503
external
 150
PROT_NUC-RNA(100L)_W0.8-5
 98
PROT_NUC-RNA(1L)_N180-2000
 97
other values
 1042

sampling campaign

 49%
Hawaii Ocean Time-series cruises
 503
GEOTRACES ARCTIC 2015
 204
GP13
 185
GEOTRACES
 130
other values
 1943

sampling station

62%
ALOHA
 757
underway
 696
CTD
 275
SI03
 79
other values
 2003

sampling platform

 21%
SV Tara
 1093
CGC Healy
 204
RV Antares
 17

lower size cutoff (collection filter pore size, µm)

89%
0.22
3163
0.2
 799
0.8
 355
180
 199
other values
 882

upper size cutoff (pre-filter pore size, µm)

89%
Infinity
3100
3
 443
0.2
 279
5.0
 275
other values
 1302

added_matter

 1%
Nutrients,Oil,Dispersant
 36
Nutrients,Oil
 33
Nutrients,Dispersant
 18
Nutrients
 18

alkalinity

 4%
2332
 10
2320
 9
2321
 9
2305
 8
other values
 246

ammonium_uM

 1%
0.03
 4
0.19
 4
0.28
 4
0.58
 4
other values
 93

dissolved_organic_carbon_uM

 0%
324.8
 2
316.35
 1
320.6
 1
321.65
 1
other values
 46

full_description

 3%
Terra Nova:Summer
 53
Hibernia:Summer
 47
Thebaud:Summer
 38
Hibernia:Winter
 22
other values
 42

nitrate concentration (µM)

 16%
0
 29
0.244232
 23
-1.016536
 21
-0.166794
 7
other values
 930

nitrite_uM

 1%
0.05
 11
0.01
 8
0.07
 7
0.04
 6
other values
 52

note

 1%
Ballast water samples, discharged at Port of LA/LB. The coordinates are the ballast uptake location at sea, not the port.
 33
concentrations in molar seem unlikely
 28
Ballast water samples, discharged at Port of Singapore. The coordinates are the ballast uptake location at sea, not the port.
 15

pH

 0%
8.373
 2
7.503
 2

phosphate_uM

 12%
0
 78
0.05
 18
0.01
 12
0.19
 12
other values
 611

salinity_ppm

 0%
0.035
 1

sample_description

70%
No Station
 685
Keywords: GSC:MIxS;MIMS:6.0
 377
Keywords: GSC:MIxS;MIMS:5.0
 356
Terra Nova:Summer
 53
other values
 2803

sample_title

85%
Metagenome or environmental sample from seawater metagenome
 214
MIMS Environmental/Metagenome sample from coral reef metagenome
 132
MIMS Environmental/Metagenome sample from marine metagenome
 96
Metagenome or environmental sample from marine metagenome
 85
other values
4630

silicate_uM

 2%
0.1
 5
0
 4
0.6
 4
1.6
 4
other values
 127

study_accession

 9%
PRJNA330601
 4
PRJNA330603
 4
PRJNA266672
 1
PRJNA266673
 1
other values
 575