Environmental samples

Studies:

Habitats

lake

 1308

river

 1266

aquifer

 679

soil

 592

leaf

 511

sewage

 498

room

 364

sea

 351

pond

 226

table

 226

park

 181

field

 129

estuary

 128

glacier

 124

ocean

 118

desert

 111

aerosol

 106

plain

 75

shale

 69

mine

 57

city

 48

inlet

 46

marsh

 44

coast

 41

bay

 39

pit

 24

rock

 23

land

 22

air

 17

brine

 17

well

 17

beach

 16

fen

 12

seep

 12

ridge

 10

dune

 9

farm

 6

sand

 6

bark

 5

cave

 4

alas

 3

moor

 3

mud

 1

location

100%
Singapore: Nanyang Technology University campus (exact_location)
 783
Canada (exact_location)
 712
Singapore (country)
 616
China (exact_location)
 612
other values
24036

resolution of location info

100%
exact_location
22162
region
 1763
country
 1615
site
 603
other values
 616

source material

100%
soil [ENVO:00001998]
 5437
sediment [ENVO:00002007]
 2802
fresh water [ENVO:00002011]
 2412
groundwater [ENVO:01001004]
 1447
other values
14661

source material environment

100%
lake [ENVO:00000020]
 1308
river [ENVO:00000022]
 1266
forest soil [ENVO:00002261]
 1141
human house [ENVO:01000418]
 897
other values
22147

artificial or special treatment

 18%
sorted cells
 3151
cultivation
 1546
mesocosm
 132
paleosample
 8
spike-in
 2

elevation (meters)

 30%
116
 783
1553
 443
294.0
 387
0
 351
other values
 6084

depth (meters)

 44%
0
 2415
0.0
 777
1
 617
unknown
 489
other values
 7500

pH

 16%
1.50-5.77
 858
5.78-7.08
 1152
7.09-7.50
 562
7.50-8.20
 886
8.21-10.80
 825

mean annual precipitation (mm)

 4%
395-2486
 180
516
 180
523
 78
400-500
 63
other values
 753

mean annual temperature (°C)

 4%
9.8
 180
−2.7-27.9
 180
1.2
 78
4.5
 63
other values
 760

temperature (°C)

 14%
-17.0-10.8
 766
10.9-16.7
 751
16.8-26.6
 754
26.6-40.0
 757
41.0-86.6
 755

lower size cutoff (collection filter pore size, µm)

 8%
0.22
 1508
0.2
 366
0
 193
0.45
 144
other values
 125

upper size cutoff (pre-filter pore size, µm)

 8%
Infinity
 1134
5
 178
10
 145
20
 127
other values
 714

DESCRIPTION

 0%
Initial microbiome in soil 6w after crude oil addition
 5
Crude oil Cultivated bacteria in soil 6 w after crude oil addition
 5
Bacteria cultured on regular media in soil 6w after crude oil addition
 5
Initial soil microbiome
 3

DOL_range

 0%
13 to 20
 3
21 to 28
 3
5 to 12
 3
5 to 21
 3
other values
 12

Field_nominal_C

 0%
5
 8
25
 8
20
 8
10
 8

acetate_uM

 0%
34.90
 1
3.95
 1
20.54
 1
19.50
 1
1.80
 1

added_matter

 0%
Nutrients,Oil,Dispersant
 36
Nutrients,Oil
 33
Nutrients
 18
Nutrients,Dispersant
 18
other values
 12

ammonium_mg_l

 0%
0.01
 5
0.25
 5
358.3
 4
0.04
 3
other values
 49

ammonium_uM

 0%
62
 3
0.6748295
 2
0.268083
 1
0.3050599
 1
other values
 40

breed or strain

 0%
Pinot Meunier
 14
Flame
 7
Agave salmiana Otto ex Salm subsp. crassispina
 4
Crimson
 3
other values
 4

butyrate_uM

 0%
0
 2
0.43
 1
0.17
 1
0.12
 1

calcium_mg_l

 0%
19.4
 2
47.9
 2
0.75
 1
0.88
 1
other values
 31

carbon_dioxide_uM

 0%
113.6702608
 2
139.1584005
 2
194.4967442
 2
214.0262472
 2
other values
 140

chloride_mg_l

 0%
13.38
 2
2.4
 2
10.3
 1
10.5
 1
other values
 31

climatic_zone

 0%
future
 90
ambient
 90

dissolved_organic_carbon_uM

 0%
99
 3
78.58
 3
182.67
 3
137.5
 3
113.08
 3

dissolved_oxygen_uM

 0%
123.16
 3
138.44
 3
138.75
 3
147.81
 3
other values
 12

enriched_soil

 0%
TRUE
 24
FALSE
 3

ferric_iron_uM

 0%
0
 55
0.9
 5
0.2
 2
0.7
 2
other values
 94

ferrous_iron_uM

 0%
0
 31
1.6
 6
6.4
 3
0.7
 2
other values
 119

ferrous_uM

 0%
13.1 +- 2.86
 3
9.49 +- 2.33
 2
11.5 +- 4.12
 2
6.62 +- 2.69
 1
5.55 +- 1.59
 1

filtration_lower_threshold

 0%
0.22
 34

filtration_lower_threshold_kDa

 0%
3
 26
10
 22

food_name

 0%
Garlic, Ginger, Onion, Green onion, Leaf, Sugar, Glucose, Monosodium, Sodium saccharin, Acesulfame potassium, Aspartame, Shrimp, Anchovy, Xanthan gum
 6
Garlic, Ginger, Green onion, Leaf, Sugar, Extract, Unclear seasoning, Shrimp, Anchovy
 3
Garlic, Ginger, Onion, Green onion, Leaf, Sugar, Extract of decomposing wheat, Anchovy, Yellow corvina and cutlassfish
 3
Garlic, Ginger, Onion, Green onion, Leaf, Sugar, Extract, Shiitake mushrooms, Shrimp, Anchovy
 3
other values
 102

formate_uM

 0%
2.92
 1
2.55
 1
2.32
 1
10.38
 1
1.61
 1

full_description

 0%
Terra Nova:Summer
 53
Hibernia:Summer
 47
Thebaud:Summer
 38
Hibernia:Winter
 22
other values
 59

host species

 3%
3702
 265
38727
 181
62336
 106
2706
 55
other values
 425

host_common_name

 2%
switchgrass
 181
silvergrass
 106
limber pine
 49
water fern
 42
other values
 226

host_scientific_name

 3%
Arabidopsis thaliana
 265
Panicum virgatum
 181
Miscanthus sp
 106
Citrus sp.
 55
other values
 425

host_tax_scientific_name

 0%
Setaria italica
 54

hydrosulfide_uM

 0%
1.93 +- 2.36
 3
0.51 +- 0.42
 2
0.13 +- 0.04
 2
0.11 +- 0.09
 1
0.08 +- 0.05
 1

infant_ID

 0%
Sloan2_5
 9
Sloan2_12
 3
Sloan2_18
 3
Sloan2_3
 3
other values
 6

iron_mg_l

 0%
0.36
 2
0.1
 1
0.14
 1
0.19
 1
other values
 4

iron_uM

 0%
0
 22
2.5
 4
14.3
 2
20.8
 2
other values
 138

isolation source

 12%
aquifer
 625
hot spring sediment
 444
saline lake water
 407
Hot spring microbial mat
 187
other values
 1549

land_use_category

 1%
fen
 52
pasture
 49
Upland
 42
Forest
 38
other values
 247

land_use_full

 1%
conventional farming
 60
intensive grassland
 60
organic farming
 60
pasture
 41
other values
 154

location_name

 1%
Pine Lake
 4
Green Lake
 3
Heart Lake
 2
Lac Pelletier
 2
other values
 245

magnesium_mg_l

 0%
3.1
 2
8
 2
8.3
 2
0.28
 1
other values
 30

manganese_uM

 0%
286
 3

methane_uM

 0%
175
 3
0.07
 2
0.48640903
 2
0.824510505
 2
other values
 224

nitrate concentration (µM)

 3%
0.32
 441
0
 158
0.48
 104
5.97
 94
other values
 234

nitrate_mg_l

 0%
0.115
 5
19.32
 4
8.14
 4
0
 3
other values
 93

nitrate_nitrite_uM

 0%
36.006
 2
0.28
 1
0.304
 1
0.508
 1
other values
 30

nitrite_mg_l

 0%
0.003
 7
0.16
 4
464.1
 4
0.39
 2
other values
 20

nitrite_uM

 0%
<2.17
 9
0.43
 3

nitrogen_dioxide_uM

 0%
9.5
 3
23.49
 3
19.09
 3
11.7
 3
1.628
 3

nitrogen_percent

 0%
0.13
 21
0.09
 20
0.10
 19
0.14
 19
other values
 175

note

 0%
Tomato seedlings were incubated in the greenhouse at 27-33 degrees celsius for 3 weeks before planting in the field in rhizoboxes.
 40
concentrations in molar seem unlikely
 28
hydrocarbon contaminated soil
 25
control
 9
location estimated from map in paper (Fig 1)
 6

original_sample_name

 11%
Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.G3
 1
Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.H3
 1
Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.J3
 1
Anoxic lake water microbial communities from Lake Kivu, Rwanda - MDM2.Kivu325.minimeta.L3
 1
other values
 2973

oxygen_mg_l

 1%
0
 20
-0.1
 7
0.1
 7
0.3
 6
other values
 285

oxygen_uM

 2%
196.56
 187
107.194
 92
0.463
 82
0-4
 56
other values
 212

pH_range

 0%
5.31 to 5.49
 20
5.34 to 5.44
 20
7.49 to 7.60
 17
circumneutral
 9
other values
 20

ph_range

 0%
approx. 7
 24

phosphate_uM

 0%
0.15
 3
0.18
 3
0.23
 3
0.65
 3
other values
 63

phosphorus_mg_l

 0%
0.1
 3
0.18
 3
0.08
 1
0.09
 1
other values
 11

phosphorus_uM

 0%
74.3 +- 45.2
 3
64.6 +- 38.8
 2
45.2 +- 10.3
 2
42.0 +- 5.49
 1
32.3 +- 4.84
 1

plant

 0%
Buffalo
 8
Carex appressa
 8
Leptospermum continentale
 8
control soil
 8
other values
 17

potassium_mg_l

 0%
1.3
 3
1.7
 3
1.2
 2
1.4
 2
other values
 27

propionate_uM

 0%
4
 1
3.88
 1
2.01
 1
1.05
 1
0.96
 1

salinity (PSU)

 0%
0.1
 16
0
 7
34.56
 7
0.12
 5
other values
 67

salinity_ppm

 0%
0.035
 3
0.0325
 2

salinity_ppt

 0%
0.7
 5
0.01
 3
0.08
 3
0.22
 3
other values
 76

sample_description

 28%
Keywords: GSC:MIxS;MIMS:5.0
 1502
Vaccuum dust from bedding and floor adjacent to bed
 879
soil metagenome
 287
Metagenomic leaf sample of NCLB infected maize
 256
other values
 4757

sample_title

88%
Metagenome or environmental sample from dust metagenome
 995
MIMS Environmental/Metagenome sample from air metagenome
 783
Sample for the Ancient arctic plant and animal eDNA shotgun sequencing dataset
 524
soil sample
 479
other values
20935

sampling campaign

 0%
TS14
 127

sampling platform

 0%
R/V Tan Suo Yi Hao
 127

sampling_site

 0%
greenhouse
 25
Tasiilaq
 22
Kangerlussuaq
 6
Qassimiut
 2
other values
 4

silicate_uM

 0%
10.51
 2
10.21
 1
11.35
 1
11.5
 1
other values
 32

site_description

 0%
silt loam
 10
Sandy
 10

sodium_mg_l

 0%
2.7
 2
7.9
 2
1.11
 1
1.72
 1
other values
 31

specific_material

 0%
effluent of wastewater
 3
hospital wastewater
 3
influent of wastewater
 3
river sediment
 3
other values
 6

study_accession

 34%
PRJEB24121
 290
PRJEB24450, PRJEB31530
 194
PRJEB19856, PRJEB19855, PRJEB18701
 149
PRJNA362455
 43
other values
 8536

sulfate_mg_l

 1%
0
 10
115
 5
133.5
 5
155.3
 5
other values
 297

sulfate_uM

 0%
<1.04
 9
32
 3

sulfide_uM

 0%
363
 3
15.2
 1
25.4
 1
287.2
 1
other values
 6

temperature_range

 0%
35 to 40
 59
14 to 18
 9
20.5 to 21.4
 3

time_period

 0%
35000 BP
 1
>28 BP
 1
>36 BP
 1
>40 BP
 1
other values
 5

total_dissolved_nitrogen_uM

 0%
87.64
 3
39.79
 3
361.29
 3
197.36
 3
165.71
 3

total_iron_uM

 0%
21.5 +- 17.9
 3
12.4 +- 4.48
 2
11.6 +- 6.62
 2
8.95 +- 0.98
 1
5.37 +- 1.97
 1

total_manganese_uM

 0%
2.00 +- 1.46
 3
0.36 +- 0.00
 3
0.38 +- 0.24
 2
0.35 +- 0.07
 1

total_nitrate

 0%
0.59-0.67
 20
0.61-0.67
 20
1.021
 1
1.054
 1
other values
 2

total_organic_carbon

 0%
1.89-2.05
 20
1.93-2.01
 20
0.4840
 2
1.721
 2
other values
 14

vegetation

 0%
sedges
 82
Sphagnum
 38
grasses
 30
bare_soil
 24
other values
 58

vegetation_full

 0%
sedges
 68
Sphagnum_spp.
 33
grasses
 30
bare_soil
 13
other values
 51

water_depth_meters

 0%
unknown
 107
2670
 2
3195
 2
10063
 1
other values
 15